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          • Home
          • › Search Tool
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          • › Rn02395495_m1
          See other TRIM5 GE Assays ›
          Gene Symbol:
          Trim5
          Gene Name:
          tripartite motif-containing 5
          Gene Aliases:
          RGD1304579
          Chromosome Location:
          Chr.1: 169446774 - 169463760 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn02395495_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price 284.00
          Your Price
          Online offer: 266.65
          266.65
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Trim5
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001014023.1 NP_001014045.1 5 - 6 881 68
          XM_006229912.2 XP_006229974.1 5 - 6 1367 68
          GenBank mRNA BC078926.1 - 5 - 6 881 7106563 68

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0100006263.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Recommended Assay Rattus norvegicus Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Trim5

          Panther Classification:

          Molecular Function -

          ubiquitin-protein ligase

          Gene Ontology Categories:

          Function(s) Process(es)

          activation of innate immune response
          pattern recognition receptor signaling pathway
          regulation of lipopolysaccharide-mediated signaling pathway
          positive regulation of I-kappaB kinase/NF-kappaB signaling
          positive regulation of MAPK cascade
          innate immune response
          negative regulation of viral entry into host cell
          positive regulation of sequence-specific DNA binding transcription factor activity
          positive regulation of NF-kappaB transcription factor activity
          protein trimerization
          protein K63-linked ubiquitination
          negative regulation of viral release from host cell
          ubiquitin-protein transferase activity
          zinc ion binding
          signaling pattern recognition receptor activity
          identical protein binding
          protein homodimerization activity

          MicroArray Probes:

          Agilent Affymetrix

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_42_P798500 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 487320 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 48424 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 141635 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 18599 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 535527 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 627812 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 711133 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 610872 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 406700 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 224557 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 405111 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 866315 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 558113 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 59980 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 66563 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P798500 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P798500 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_42_P798500 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P989677 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 68216 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 57876 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10724383 - -
          Affymetrix Rat Gene 1.0 ST Array 10724382 - -
          Affymetrix Rat Gene 1.0 ST Array 10724385 - -
          Affymetrix Rat Gene 1.0 ST Array 10724379 - -
          Affymetrix Rat Gene 1.0 ST Array 10724386 - -
          Affymetrix Rat Gene 1.0 ST Array 10724378 - -
          Affymetrix Rat Gene 1.0 ST Array 10724381 - -
          Affymetrix Rat Gene 1.0 ST Array 10724384 - -
          Affymetrix Rat Gene 1.0 ST Array 10724380 - -
          Affymetrix Rat Gene 1.1 ST Array 10724377 - -
          Rat Genome 230 2.0 Array 1372112_at - -
          Rat Genome 230 2.0 Array 1372112_PM_at - -
          Affymetrix HT Rat Focus Array 1372112_PM_at - -
          Affymetrix HT Rat Focus Array 1372112_at - -
          Affymetrix Rat Clariom S Assay PSR0100049451.rn.1 TC0100006263.rn.1 RTA TC
          Rat Expression Set 230 1372112_at - -
          Rat Expression Set 230 1372112_PM_at - -
          Affymetrix Rat Gene 1.0 ST Array 10724377 - -
          Rat Genome U34 Set rc_AI012552_at - -

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          Host server : magellan-search-blue-64dd947b88-8ltcg:80/100.66.77.141:80.
          git-commit: 0f46c0ba67a87c24f5ac662a3edafcaba07cd08c
          git-url: https://github.com/thermofisher/magellan-search
          git-branch: release/2.45.0-Offline