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- SNP ID:
- rs556540091
- Gene
-
PHTF2TMEM60 - Gene Name
- Set Membership:
- -
- Chromosome Location:
- Chr.7: 77798420 - 77798420 on Build GRCh38
- Polymorphism:
- A/G, Transition substitution
- Context Sequence [VIC/FAM]:
CGCCTCCTCAAACGACTGCGGTAGA[A/G]GATCTCTCAGTTCTACCTCAGTGCC
Genomic Map
Back To TopAssay Details
Species: |
Human | ||||||||||||||||||||||||||||||||||||||
dbSNP Submissions: |
NA
|
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Phenotype: |
MIM: 616785
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Literature Links: |
PHTF2 PubMed Links | ||||||||||||||||||||||||||||||||||||||
Allele Nomenclature: |
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Minor Allele Frequency: |
| 1000Genome | Applied Biosystems® | HapMap | |||
|---|---|---|---|---|---|
Global
|
Caucasian - Not Available | CEPH (CEU) - Not Available | |||
EAS
|
African American - Not Available | YRI (Yoruba) - Not Available | |||
SAS
|
Chinese - Not Available | CHB (Han Chinese) - Not Available | |||
AFR
|
Japanese - Not Available | JPT (Japanese) - Not Available | |||
EUR
|
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AMR
|
| PHTF2 - putative homeodomain transcription factor 2 | ||||||
|---|---|---|---|---|---|---|
| Transcript Accession | SNP Location | SNP Type | Observed Codons | Observed Amino Acid | Protein ID | |
| NM_001127357.1 | 11 | Intron | NP_001120829.1 | |||
| NM_001127358.1 | 11 | Intron | NP_001120830.1 | |||
| NM_001127359.1 | 11 | Intron | NP_001120831.1 | |||
| NM_001127360.1 | 11 | Intron | NP_001120832.1 | |||
| NM_020432.4 | 11 | Intron | NP_065165.3 | |||
| XM_005250508.4 | 11 | Intron | XP_005250565.1 | |||
| XM_005250509.4 | 11 | Intron | XP_005250566.1 | |||
| XM_006716063.3 | 11 | Intron | XP_006716126.1 | |||
| XM_011516422.2 | 11 | Intron | XP_011514724.1 | |||
| XM_011516423.2 | 11 | Intron | XP_011514725.1 | |||
| XM_011516424.2 | 11 | Intron | XP_011514726.1 | |||
| XM_017012458.1 | 11 | Intron | XP_016867947.1 | |||
| XM_017012459.1 | 11 | Intron | XP_016867948.1 | |||
| TMEM60 - transmembrane protein 60 | ||||||
|---|---|---|---|---|---|---|
| Transcript Accession | SNP Location | SNP Type | Observed Codons | Observed Amino Acid | Protein ID | |
| NM_032936.3 | 11 | UTR 5 | NP_116325.1 | |||
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