Platinum SuperFi II DNA Polymeraseは、高い処理能力とPCR阻害物質に対する耐性を持つ、設計酵素です。また、この機能により、高速サイクリングプロトコルや長いターゲットの増幅も可能になります(最大20 kb)。Platinumホットスタート技術は、初期のPCR変性ステップまで酵素活性を阻害する特許抗体に基づき、非特異的な増幅とプライマー劣化を防止します。また、この技術は室温での反応セットアップを可能にし、感度と収率を向上させます。
SuperFi II PCR バッファーの独自の組成により、アニーリング温度は、一般的なデザインルールに従って設計されたほとんどのプライマーペアで60 ℃です。バッファー中の等安定化分子は、アニーリングステップ中のプライマーテンプレート二重安定性が向上し、各プライマーペアのアニーリング温度を最適化することなく特異性が向上します。Platinum SuperFi II DNAポリメラーゼを使用すれば、ユニバーサルプライマーアニーリング温度と最も長いフラグメントに合わせた伸長ステップにより、異なるPCRアッセイのサイクリングを一つのプロトコルで同時に実施することができます。
Platinum Super Fi II DNAポリメラーゼのアプリケーション: •忠実度の高いPCR •クローニングおよびサブクローニング •部位特異的突然変異誘発 •GCリッチテンプレートの増幅 •シーケンス用のテンプレート生成 •ハイスループットPCR •純度が不十分なサンプルの増幅 • 長いPCR •速いPCR
What are your recommendations when working with long amplicons using Platinum SuperFi II DNA Polymerase?
Good lab practices are important for long fragment amplification. These include using high-quality templates (pure, fresh, and intact) and fresh primer solutions. Reducing primer concentration to 0.2 µM may also improve the results.
Can I use Platinum SuperFi DNA Polymerase cycling protocol and primer annealing temperature with Platinum SuperFi II DNA Polymerase?
Yes, Platinum SuperFi II DNA Polymerase works at both universal 60 degrees C annealing temperature and at annealing temperatures calculated with a Tm calculator.
Can I perform TA cloning with Platinum SuperFi II DNA Polymerase?
Platinum SuperFi II DNA Polymerase produces blunt-ended PCR products that can be cloned directly into blunt-ended cloning vectors. TA cloning is also possible if 3' dA-overhangs are added after PCR. We recommend purifying the PCR products of Platinum SuperFi DNA Polymerase before adding the overhangs. The procedure for adding 3' dA-overhangs (TA cloning) includes the following steps:
- Purify the PCR product (e.g., with a PCR purification kit or phenol extraction/DNA precipitation). Before adding the overhangs, PCR product must be purified, as the strong proofreading activity of any remaining Platinum SuperFi DNA Polymerase will degrade the added 3' dA-overhangs.
- Perform 3' dA addition with a Taq DNA polymerase.
Reaction components:
Purified PCR product
0.2 mM dATP
1x Taq Buffer
1 U Taq DNA Polymerase
Incubate the reaction for 20 min at 72 degrees C.
- Proceed to TA cloning. For optimal ligation efficiency, we recommend using fresh PCR products, since 3' dA-overhangs can be lost during storage
Can I perform restriction digestion in the Platinum SuperFi II reaction buffer?
Platinum SuperFi II reaction buffer is compatible with restriction digestion directly after PCR. Note that Platinum SuperFi II DNA Polymerase is not inactivated during PCR, thus purification of PCR products before restriction digestion is recommended if intact 5'- or 3'- overhangs are needed for cloning.
A PCR amplicon-based SARS-CoV-2 replicon for antiviral evaluation.
Authors:Kotaki T, Xie X, Shi PY, Kameoka M
Journal:Sci Rep
PubMed ID:33500537
'The development of specific antiviral compounds to SARS-CoV-2 is an urgent task. One of the obstacles for the antiviral development is the requirement of biocontainment because infectious SARS-CoV-2 must be handled in a biosafety level-3 laboratory. Replicon, a non-infectious self-replicative viral RNA, could be a safe and effective tool for ... More
Engineering SARS-CoV-2 using a reverse genetic system.
Authors:Xie X, Lokugamage KG, Zhang X, Vu MN, Muruato AE, Menachery VD, Shi PY
Journal:Nat Protoc
PubMed ID:33514944
'Reverse genetic systems are a critical tool for studying viruses and identifying countermeasures. In response to the ongoing COVID-19 pandemic, we recently developed an infectious complementary DNA (cDNA) clone for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The reverse genetic system can be used to rapidly engineer viruses with desired ... More
The analysis of GSTA1 promoter genetic and functional diversity of human populations.
Authors:Mlakar V, Curtis PH, Armengol M, Ythier V, Dupanloup I, Hassine KB, Lesne L, Murr R, Mlakar SJ, Nava T, Ansari M
Journal:Sci Rep
PubMed ID:33658540
'GSTA1 encodes a member of a family of enzymes that function to add glutathione to target electrophilic compounds, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTA1 has several functional SNPs within its promoter region that are responsible for a change in its expression by altering promoter ... More
Epigallocatechin-3-gallate Alleviates Vanadium-Induced Reduction of Antioxidant Capacity via Keap1-Nrf2-sMaf Pathway in the Liver, Kidney, and Ovary of Laying Hens.
Authors:Ma Y, Shi Y, Wu Q, Ma W
Journal:Biol Trace Elem Res
PubMed ID:33405082
'This study evaluated the effect of epigallocatechin-3-gallate (EGCG) alleviating the reduction of antioxidant capacity induced by dietary vanadium (V) in the liver, kidney, and ovary of laying hens. Furthermore, Kelch-like ECH-associated protein 1(Keap1)-nuclear factor erythroid 2-related factor 2 (Nrf2)-small Maf proteins (sMaf) pathway was explored to reveal the molecular mechanism. ... More
Human Ubiquitin-Specific Peptidase 18 Is Regulated by microRNAs
Authors:Rubino E, Cruciani M, Tchitchek N, Le Tortorec A, Rolland AD, Veli Ö, Vallet L, Gaggi G, Michel F, Dejucq-Rainsford N, Pellegrini S
Journal:Front Genet
PubMed ID:33633774
'Ubiquitin-specific peptidase 18 (USP18) acts as gatekeeper of type I interferon (IFN) responses by binding to the IFN receptor subunit IFNAR2 and preventing activation of the downstream JAK/STAT pathway. In any given cell type, the level of USP18 is a key determinant of the output of IFN-stimulated transcripts. How the ... More