Do you have any recommendations for troubleshooting the amplification of GC-rich or problematic targets with Platinum Hot Start PCR Master Mix (2X) (Cat. Nos. 13000012, 13000013, 13000014)?
We have the following recommendations:
Increase the extension time from 1 min/kb to 1.5 min/kb.
Vary total PCR cycles from 20-40; 35 cycles is typical.
Try denaturing at 95 degrees C for 45 seconds.
GC-rich or problematic targets work better with MgSO4 instead of MgCl2.
For GC-rich templates, test higher annealing temperatures starting with the temperature that is equal to your primer Tm and in increments of 2 degrees C for up to six different temperatures.
Note: Addition of Platinum GC Enhancer solution enhances the amplification of GC-rich and problematic sequences.
Increase the extension time from 1 min/kb to 1.5 min/kb.
Vary total PCR cycles from 20-40; 35 cycles is typical.
Try denaturing at 95 degrees C for 45 seconds.
GC-rich or problematic targets work better with MgSO4 instead of MgCl2.
For GC-rich templates, test higher annealing temperatures starting with the temperature that is equal to your primer Tm and in increments of 2 degrees C for up to six different temperatures.
Note: Addition of Platinum GC Enhancer solution enhances the amplification of GC-rich and problematic sequences.