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          • Home
          • › Search Tool
          • › Search Results
          • › Mm01616047_m1
          See other OTX1 GE Assays ›
          Gene Symbol:
          Otx1
          Gene Name:
          orthodenticle homolog 1
          Gene Aliases:
          A730044F23Rik, jv
          Chromosome Location:
          Chr.11: 21994764 - 22001651 on Build GRCm38
          Species:
          Mouse
          Species Specific ID (Flybase ID):
          -
          Assay ID Mm01616047_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price 284.00
          Your Price
          Online offer: 266.65
          266.65
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Otx1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_011023.3 NP_035153.1 4 - 5 526 127
          GenBank mRNA AK042975.1 - 4 - 5 490 127
          AK050758.1 - 4 - 5 487 127
          AK083434.1 - 4 - 5 488 127
          AK083671.1 - 4 - 5 470 127
          AK158588.1 - 2 - 3 2884 127
          BC057105.1 - 3 - 4 436 6416436 127
          BC058354.1 - 3 - 4 394 6816961 127

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          More Information


          Updated Mapping Information

          This assay targets the same location as MTA transcript cluster(s) TC1100002333.mm.1

          Set Membership:

          Ambion siRNA available Amplicon length greater than or equal to 101 Mammalian Gene Collection Recommended Assay Mus musculus Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Otx1

          Panther Classification:

          Molecular Function -

          homeodomain transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          regulation of transcription, DNA-templated
          regulation of transcription from RNA polymerase II promoter
          transcription from RNA polymerase II promoter
          multicellular organism development
          anterior/posterior pattern specification
          metencephalon development
          forebrain development
          midbrain development
          inner ear morphogenesis
          positive regulation of transcription from RNA polymerase II promoter
          diencephalon morphogenesis
          RNA polymerase II core promoter proximal region sequence-specific DNA binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          DNA binding
          transcription factor activity, sequence-specific DNA binding
          protein binding
          sequence-specific DNA binding

          MicroArray Probes:

          Affymetrix

          Array Name Probe IDs Targets Target Type
          Affymetrix Mouse Clariom S Array PSR1100022124.mm.1 NM_011023.3.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100022124.mm.1 NM_011023.3 Refseq
          Affymetrix Mouse Clariom S Array PSR1100022124.mm.1 TC1100002333.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1100022123.mm.1 NM_011023.3.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100022123.mm.1 NM_011023.3 Refseq
          Affymetrix Mouse Clariom S Array PSR1100022123.mm.1 TC1100002333.mm.1 MTA TC

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