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- Gene Symbol:
-
Nsd1 - Gene Name:
- nuclear receptor binding SET domain protein 1
- Gene Aliases:
- -
- Chromosome Location:
- Chr.17: 9840859 - 9955394 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Nsd1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001107337.1 | NP_001100807.1 | 8 - 9 | 4267 | 60 | |
| XM_006253620.2 | XP_006253682.1 | 8 - 9 | 4516 | 60 | ||
| XM_006253621.2 | XP_006253683.1 | 8 - 9 | 4618 | 60 | ||
| XM_006253622.2 | XP_006253684.1 | 8 - 9 | 4346 | 60 | ||
| XM_006253623.2 | XP_006253685.1 | 8 - 9 | 4505 | 60 | ||
| XM_006253624.2 | XP_006253686.1 | 8 - 9 | 4442 | 60 | ||
| XM_006253625.2 | XP_006253687.1 | 8 - 9 | 4621 | 60 | ||
| XM_006253627.2 | XP_006253689.1 | 8 - 9 | 4515 | 60 | ||
| XM_008771491.1 | XP_008769713.1 | 8 - 9 | 4571 | 60 | ||
| XM_008771492.1 | XP_008769714.1 | 7 - 8 | 3482 | 60 | ||
| XM_008771493.1 | XP_008769715.1 | 7 - 8 | 3772 | 60 | ||
| XM_008771494.1 | XP_008769716.1 | 8 - 9 | 4515 | 60 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1700001330.rn.1Set Membership: |
Amplicon length less than or equal to 70
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
gastrulation with mouth forming second
biological_process
histone H3-K36 methylation
histone methylation
histone H4-K20 methylation
histone lysine methylation
positive regulation of transcription, DNA-templated
molecular_function
chromatin binding
transcription cofactor activity
transcription corepressor activity
zinc ion binding
histone-lysine N-methyltransferase activity
estrogen receptor binding
histone methyltransferase activity
histone methyltransferase activity (H4-K20 specific)
retinoic acid receptor binding
retinoid X receptor binding
thyroid hormone receptor binding
histone methyltransferase activity (H3-K36 specific)
androgen receptor binding
negative regulation of transcription from RNA polymerase II promoter
gastrulation with mouth forming second
biological_process
histone H3-K36 methylation
histone methylation
histone H4-K20 methylation
histone lysine methylation
positive regulation of transcription, DNA-templated
molecular_function
chromatin binding
transcription cofactor activity
transcription corepressor activity
zinc ion binding
histone-lysine N-methyltransferase activity
estrogen receptor binding
histone methyltransferase activity
histone methyltransferase activity (H4-K20 specific)
retinoic acid receptor binding
retinoid X receptor binding
thyroid hormone receptor binding
histone methyltransferase activity (H3-K36 specific)
androgen receptor binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P037205 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P079796 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_43_P21528 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 807798 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 123047 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 911960 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 36533 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 51730 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 68514 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 46722 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 394398 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 484173 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 420368 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 582193 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 642656 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 796628 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 214221 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 315071 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 63410 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 655727 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 568805 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 828939 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 407454 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 921843 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 900142 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 924024 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 43171 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 409377 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 132954 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 384489 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 779296 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 579732 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 935317 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 942627 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 536935 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 624047 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 423762 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 77287 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 957001 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 568915 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 620454 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 105617 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 787552 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 603607 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 19643 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 121790 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 200303 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 815893 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 824110 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 905007 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 36863 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 356398 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 281318 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 627469 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 340933 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 449679 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 582006 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 972614 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 349698 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 185493 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 652011 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 110593 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 861721 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 877022 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 937158 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 871954 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 253485 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 740180 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 903428 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 963231 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 571892 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 175126 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 535256 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 255792 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 595678 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 805052 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 671102 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 166668 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 48548 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 969139 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 33489 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 182553 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 182791 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 21855 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 45165 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 33983 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 121104 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 56909 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 62324 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 118695 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 49755 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 152816 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 112943 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 82089 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 43946 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 81937 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 100011 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P21528 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P079796 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P037205 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P037205 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P21528 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P079796 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_43_P21528 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P037205 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P079796 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P527432 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P20192 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P22823 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 54332 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 96495 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 70043 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 60193 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10797311 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797313 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797305 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797306 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797299 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797316 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797317 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797310 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797307 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797300 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797309 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797312 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797315 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797320 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797314 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797303 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797304 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797302 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797308 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797301 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797318 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10797298 | - | - |
| Rat Genome 230 2.0 Array | 1380221_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1398956_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1380221_at | - | - |
| Rat Genome 230 2.0 Array | 1379560_at | - | - |
| Rat Genome 230 2.0 Array | 1379560_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1398956_at | - | - |
| Affymetrix HT Rat Focus Array | 1379560_at | - | - |
| Affymetrix HT Rat Focus Array | 1379560_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1700009215.rn.1 | TC1700001330.rn.1 | RTA TC |
| Rat Expression Set 230 | 1398956_at | - | - |
| Rat Expression Set 230 | 1398956_PM_at | - | - |
| Rat Expression Set 230 | 1380221_at | - | - |
| Rat Expression Set 230 | 1379560_PM_at | - | - |
| Rat Expression Set 230 | 1380221_PM_at | - | - |
| Rat Expression Set 230 | 1379560_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10797298 | - | - |
| Rat Genome U34 Set | rc_AI058963_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21440898 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1354380 | - | - |
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