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          • Home
          • › Search Tool
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          • › C__25647804_10
          See other KRTCAP2 GT Assays ›
          SNP ID:
          rs3814316
          Gene
          KRTCAP2 MUC1 TRIM46
          Gene Name
          keratinocyte associated protein 2
          mucin 1, cell surface associated
          tripartite motif containing 46
          Set Membership:
          > HapMap > JSNP > Validated
          Chromosome Location:
          Chr.1: 155177242 - 155177242 on Build GRCh38
          Polymorphism:
          A/G, Transition substitution
          Context Sequence [VIC/FAM]:

          CATACATCCTGGGAAACCAGGACAC[A/G]GTACAGACCCAGATCTGTGAGCTGG

          Assay ID C__25647804_10
          Size
          Availability Made To Order
          Catalog # 4351379
          Price
          Your Price
          Online offer:
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details



          Species:

          Human

          dbSNP Submissions:

          87 submissions

          Phenotype:

          MIM: 158340 MIM: 600986

          Literature Links:

          KRTCAP2 PubMed Links

          Allele Nomenclature:

          Minor Allele Frequency:

          1000Genome Applied Biosystems® HapMap
          Global
          T (0.45)
          (0.55)
          Caucasian - Not Available CEPH (CEU)
          T (0.36)
          (0.64)
          EAS
          C (0.24)
          (0.76)
          African American - Not Available YRI (Yoruba)
          T (0.17)
          (0.83)
          SAS
          T (0.43)
          (0.57)
          Japanese
          G (0.15)
          (0.85)
          JPT (Japanese)
          C (0.19)
          (0.81)
          AFR
          T (0.22)
          (0.78)
          Chinese
          G (0.33)
          (0.67)
          CHB (Han Chinese)
          C (0.20)
          (0.80)
          EUR
          T (0.36)
          (0.64)
          AMR
          C (0.43)
          (0.57)
          KRTCAP2 - keratinocyte associated protein 2
          There are no transcripts associated with this gene.
          MUC1 - mucin 1, cell surface associated
          There are no transcripts associated with this gene.
          TRIM46 - tripartite motif containing 46
          Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
          NM_001256599.1 1155 Silent Mutation ACA,ACG T,T 264 NP_001243528.1
          NM_001256600.1 1155 Silent Mutation ACA,ACG T,T 274 NP_001243529.1
          NM_001256601.1 1155 Silent Mutation ACA,ACG T,T 274 NP_001243530.1
          NM_001282378.1 1155 Silent Mutation ACA,ACG T,T 161 NP_001269307.1
          NM_001282379.1 1155 Silent Mutation ACA,ACG T,T 287 NP_001269308.1
          NM_025058.4 1155 Silent Mutation ACA,ACG T,T 287 NP_079334.3
          XM_011510002.1 1155 Silent Mutation ACA,ACG T,T 316 XP_011508304.1
          XM_017002393.1 1155 Silent Mutation ACA,ACG T,T 274 XP_016857882.1

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          More Information


          Set Membership:

          HapMap JSNP Validated

          Panther Classification:

          Molecular Function -

          ubiquitin-protein ligase

          Gene Ontology Categories:

          Process(es)

          zinc ion binding

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