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See other PCDHGA1 GT Assays ›
SNP ID:
rs17097231
Gene
PCDHGA1 PCDHGA2 PCDHGA3 PCDHGA4 PCDHGA5 PCDHGB1 PCDHGB2
Gene Name
Set Membership:
> HapMap
Chromosome Location:
Chr.5: 141360212 - 141360212 on Build GRCh38
Polymorphism:
C/G, Transversion substitution
Context Sequence [VIC/FAM]:

TTGCCCTTCCTGTTGTCTTTGTTCC[C/G]CGGGGCTCTCCCAGTCCAGATCCGC

Assay ID C__25752962_30
Size
Availability Made To Order
Catalog # 4351379
Price
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Assay Details



Species:

 Human

dbSNP Submissions:

 NA

Phenotype:

 MIM: 606288 MIM: 606289 MIM: 606290 MIM: 606291 MIM: 606292 MIM: 606299 MIM: 606300

Literature Links:

 PCDHGA1 PubMed Links

Allele Nomenclature:

Minor Allele Frequency:
1000Genome Applied Biosystems® HapMap
Global
G (0.13)
(0.87)
Caucasian - Not Available CEPH (CEU)
G (0.12)
(0.88)
EAS
G (0.12)
(0.88)
African American - Not Available YRI (Yoruba)
G (0.19)
(0.81)
SAS
G (0.14)
(0.86)
Chinese - Not Available JPT (Japanese)
G (0.16)
(0.84)
AFR
G (0.16)
(0.84)
Japanese - Not Available CHB (Han Chinese)
G (0.15)
(0.85)
EUR
G (0.07)
(0.93)
AMR
G (0.17)
(0.83)
PCDHGA1 - protocadherin gamma subfamily A, 1
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_018912.2 77 Intron NP_061735.1
NM_031993.1 77 Intron NP_114382.1
PCDHGA2 - protocadherin gamma subfamily A, 2
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_018915.3 77 Intron NP_061738.1
NM_032009.2 77 Intron NP_114398.1
PCDHGA3 - protocadherin gamma subfamily A, 3
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_018916.3 77 Intron NP_061739.2
NM_032011.1 77 Intron NP_114400.1
PCDHGA4 - protocadherin gamma subfamily A, 4
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_018917.3 77 Intron NP_061740.2
NM_032053.2 77 Intron NP_114442.2
PCDHGA5 - protocadherin gamma subfamily A, 5
There are no transcripts associated with this gene.
PCDHGB1 - protocadherin gamma subfamily B, 1
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_018922.2 77 Intron NP_061745.1
NM_032095.1 77 Intron NP_115266.1
PCDHGB2 - protocadherin gamma subfamily B, 2
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_018923.2 77 Missense Mutation CCC,CGC P,R 26 NP_061746.1
NM_032096.1 77 Missense Mutation CCC,CGC P,R 26 NP_115267.1

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