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See other ATG16L1 GT Assays ›
SNP ID:
rs2241880
Gene
ATG16L1 SCARNA5
Gene Name
Set Membership:
> HapMap
Chromosome Location:
Chr.2: 233274722 - 233274722 on Build GRCh38
Polymorphism:
A/G, Transition substitution
Context Sequence [VIC/FAM]:

CCCAGTCCCCCAGGACAATGTGGAT[A/G]CTCATCCTGGTTCTGGTAAAGAAGT

Assay ID C___9095577_20
Size
Availability Made To Order
Catalog # 4351379
Price
Your Price
Online offer:
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Assay Details



Species:

 Human

dbSNP Submissions:

 NA

Phenotype:

 MIM: 610767 MIM: 615640

Literature Links:

 ATG16L1 PubMed Links

Allele Nomenclature:

Minor Allele Frequency:
1000Genome Applied Biosystems® HapMap
Global
C (0.40)
(0.60)
Caucasian - Not Available CEPH (CEU)
T (0.43)
(0.57)
EAS
C (0.32)
(0.68)
African American - Not Available YRI (Yoruba)
C (0.27)
(0.73)
SAS
C (0.50)
(0.50)
Chinese - Not Available JPT (Japanese)
C (0.21)
(0.79)
AFR
C (0.31)
(0.69)
Japanese - Not Available CHB (Han Chinese)
C (0.39)
(0.61)
EUR
T (0.46)
(0.54)
AMR
C (0.32)
(0.68)
ATG16L1 - autophagy related 16 like 1
Transcript Accession SNP Location SNP Type Observed Codons Observed Amino Acid Protein ID
NM_001190266.1 1143 Missense Mutation ACT,GCT T,A 216 NP_001177195.1
NM_001190267.1 1143 Missense Mutation ACT,GCT T,A 184 NP_001177196.1
NM_017974.3 1143 Missense Mutation ACT,GCT T,A 281 NP_060444.3
NM_030803.6 1143 Missense Mutation ACT,GCT T,A 300 NP_110430.5
NM_198890.2 1143 Missense Mutation ACT,GCT T,A 137 NP_942593.2
XM_005246082.2 1143 Missense Mutation ACT,GCT T,A 317 XP_005246139.1
XM_005246084.2 1143 Missense Mutation ACT,GCT T,A 173 XP_005246141.1
XM_005246086.2 1143 Missense Mutation ACT,GCT T,A 156 XP_005246143.1
XM_006712608.2 1143 Missense Mutation ACT,GCT T,A 233 XP_006712671.1
SCARNA5 - small Cajal body-specific RNA 5
There are no transcripts associated with this gene.

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