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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32171706 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03606854_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK129818.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PPT2-EGFL8 NOTCH4 EGFL8 MIR6721 AGER PRRT1 LOC100507547 PPT2 FKBPL PBX2 TNXB RNF5 ATF6B AGPAT1 GPSM3 MIR6833
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss NOTCH4 C2-AS1 C6orf48 NELFE EGFL8 HCG23 AGER PPT2 NEU1 PBX2 ATF6B C2 AGPAT1 GPSM3 CYP21A2 HSPA1B STK19 HLA-DRB5 SLC44A4 LOC101929163 SNORD52 FKBPL C4A C4B TNXA RNF5 SNORD48 HLA-DRB6 ZBTB12 CYP21A1P SKIV2L CFB BTNL2 MIR6721 MIR1236 HLA-DQB1-AS1 HLA-DQA1 HSPA1A HLA-DRA C6orf10 HLA-DQB1 HLA-DRB1 MIR6833 PPT2-EGFL8 EHMT2 PRRT1 LOC100507547 TNXB DXO
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss HLA-DRB6 CYP21A1P NOTCH4 BTNL2 EGFL8 HCG23 MIR6721 AGER PPT2 HLA-DQB1-AS1 PBX2 HLA-DQA1 ATF6B HLA-DRA C6orf10 HLA-DQA2 AGPAT1 HLA-DQB1 GPSM3 CYP21A2 HLA-DRB1 MIR6833 PPT2-EGFL8 HLA-DRB5 LOC101929163 PRRT1 LOC100507547 FKBPL C4A C4B TNXA TNXB RNF5 HLA-DQB2 MIR3135B
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss CYP21A1P SKIV2L NOTCH4 C2-AS1 CFB NELFE EGFL8 MIR6721 AGER MIR1236 PPT2 PBX2 ATF6B C2 AGPAT1 GPSM3 CYP21A2 MIR6833 PPT2-EGFL8 STK19 PRRT1 LOC100507547 FKBPL C4A C4B TNXA TNXB RNF5 DXO
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LY6G5B NOTCH4 LY6G6F LY6G5C C2-AS1 C6orf48 ABHD16A NELFE EGFL8 HCG23 AGER MSH5-SAPCD1 MIR6832 PPT2 SAPCD1 LOC100287329 NEU1 PBX2 LY6G6E ATF6B C2 AGPAT1 LTA GPSM3 LOC102725068 CYP21A2 SAPCD1-AS1 HSPA1B ATP6V1G2-DDX39B LSM2 DDX39B-AS1 BAG6 TNF STK19 SNORD84 HLA-DRB5 SLC44A4 CSNK2B HCP5 LOC101929163 SNORD52 C6orf47 FKBPL C4A C4B TNXA DDX39B RNF5 MIR4646 SNORD48 LY6G6D HLA-DRB6 ZBTB12 CYP21A1P SKIV2L CFB HSPA1L BTNL2 MIR6721 MIR1236 SNORD117 LTB LY6G6C HSPA1A HLA-DRA C6orf10 VWA7 HCG26 HLA-DRB1 MIR6833 NFKBIL1 GPANK1 PPT2-EGFL8 EHMT2 ATP6V1G2 CLIC1 VARS MSH5 C6orf25 SNORA38 AIF1 MICB PRRT1 LOC100507547 APOM TNXB PRRC2A LST1 MCCD1 DXO DDAH2 NCR3
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LY6G5B NOTCH4 WDR46 C2-AS1 ABHD16A AGER MSH5-SAPCD1 PPT2 SAPCD1 HLA-DPB2 BRD2 ZBTB22 LY6G6E ZBTB9 ATF6B C2 HLA-DQA2 LTA LOC102725068 LSM2 RING1 BAG6 HCG25 STK19 HLA-DRB5 SLC44A4 TAP1 RGL2 SNORD52 C4A MIR6834 RNF5 MIR4646 LOC100294145 SNORD48 LY6G6D ZBTB12 CYP21A1P SKIV2L HSPA1L MIR6873 VPS52 BTNL2 PSMB8-AS1 MIR5004 HLA-DQB1-AS1 LTB TAPBP LY6G6C HLA-DQA1 HSPA1A DAXX PHF1 C6orf10 VWA7 HLA-DQB1 PPP1R2P1 COL11A2 ATP6V1G2 HCG24 C6orf25 KIFC1 PRRT1 LOC100507547 APOM TNXB PRRC2A MCCD1 HLA-DOB CUTA LY6G6F LY6G5C HLA-DPA1 C6orf48 NELFE EGFL8 HCG23 PSMB9 MIR6832 HLA-DOA LOC100287329 NEU1 PBX2 RXRB B3GALT4 SYNGAP1 AGPAT1 GPSM3 CYP21A2 SAPCD1-AS1 HSPA1B PSMB8 ATP6V1G2-DDX39B DDX39B-AS1 TNF HLA-DPB1 SNORD84 HLA-DMB CSNK2B HCP5 LOC101929163 C6orf47 FKBPL C4B TNXA DDX39B MIR3135B HLA-DMA HLA-DRB6 CFB PFDN6 MIR6721 MIR1236 SNORD117 HLA-DRA HCG26 HLA-DRB1 MIR6833 NFKBIL1 GPANK1 HSD17B8 PPT2-EGFL8 EHMT2 CLIC1 VARS MSH5 SNORA38 SLC39A7 AIF1 MICB RPS18 HLA-DQB2 LST1 TAP2 MIR219A1 DXO DDAH2 NCR3
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PPT2-EGFL8 NOTCH4 EGFL8 MIR6721 AGER PRRT1 LOC100507547 PPT2 FKBPL PBX2 TNXB RNF5 ATF6B AGPAT1 GPSM3 MIR6833
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LY6G5B NOTCH4 WDR46 C2-AS1 ABHD16A AGER MSH5-SAPCD1 PPT2 SAPCD1 HLA-DPB2 BRD2 ZBTB22 LY6G6E ZBTB9 ATF6B C2 HLA-DQA2 LTA LOC102725068 LSM2 RING1 BAG6 HCG25 STK19 HLA-DRB5 SLC44A4 TAP1 RGL2 SNORD52 C4A MIR6834 RNF5 MIR4646 LOC100294145 SNORD48 LY6G6D ZBTB12 CYP21A1P SKIV2L HSPA1L MIR6873 VPS52 BTNL2 PSMB8-AS1 MIR5004 HLA-DQB1-AS1 LTB TAPBP LY6G6C HLA-DQA1 HSPA1A DAXX PHF1 C6orf10 VWA7 HLA-DQB1 PPP1R2P1 COL11A2 ATP6V1G2 HCG24 C6orf25 KIFC1 PRRT1 LOC100507547 APOM TNXB PRRC2A MCCD1 HLA-DOB CUTA LY6G6F LY6G5C HLA-DPA1 C6orf48 NELFE EGFL8 HCG23 PSMB9 MIR6832 HLA-DOA LOC100287329 NEU1 PBX2 RXRB B3GALT4 SYNGAP1 AGPAT1 GPSM3 CYP21A2 SAPCD1-AS1 HSPA1B PSMB8 ATP6V1G2-DDX39B DDX39B-AS1 TNF HLA-DPB1 SNORD84 HLA-DMB CSNK2B HCP5 LOC101929163 C6orf47 FKBPL C4B TNXA DDX39B MIR3135B HLA-DMA HLA-DRB6 CFB PFDN6 MIR6721 MIR1236 SNORD117 HLA-DRA HCG26 HLA-DRB1 MIR6833 NFKBIL1 GPANK1 HSD17B8 PPT2-EGFL8 EHMT2 CLIC1 VARS MSH5 SNORA38 SLC39A7 AIF1 MICB RPS18 HLA-DQB2 LST1 TAP2 MIR219A1 DXO DDAH2 NCR3
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LY6G5B NOTCH4 LY6G6F LY6G5C C2-AS1 C6orf48 ABHD16A NELFE EGFL8 HCG23 AGER MSH5-SAPCD1 MIR6832 PPT2 SAPCD1 LOC100287329 NEU1 PBX2 LY6G6E ATF6B C2 AGPAT1 LTA GPSM3 LOC102725068 CYP21A2 SAPCD1-AS1 HSPA1B MICA ATP6V1G2-DDX39B LSM2 DDX39B-AS1 BAG6 TNF STK19 SNORD84 SLC44A4 CSNK2B HCP5 LOC101929163 SNORD52 C6orf47 FKBPL C4A C4B TNXA DDX39B MIR6891 RNF5 MIR4646 SNORD48 LY6G6D ZBTB12 CYP21A1P SKIV2L CFB HSPA1L BTNL2 MIR6721 MIR1236 SNORD117 HLA-B LTB LY6G6C HSPA1A HLA-DRA C6orf10 VWA7 HCG26 MIR6833 NFKBIL1 GPANK1 PPT2-EGFL8 EHMT2 ATP6V1G2 CLIC1 VARS MSH5 C6orf25 SNORA38 AIF1 MICB PRRT1 LOC100507547 APOM TNXB PRRC2A LST1 MCCD1 DXO DDAH2 NCR3

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