Name: [Hs06875959_cn] [ABCA1]
Creator: Thermo Fisher Scientific
Keywords: [ABCA1] Assay, [ATP binding cassette subfamily A member 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	19
Gene Name:	ATP binding cassette subfamily A member 1
Gene Aliases:	ABC-1, ABC1, CERP, HDLDT1, TGD
Location:	Chr.9:104781002-104928246 on Build GRCh38
Assay Gene Location:	Within Intron 10

Gene Symbol	Transcript Accession	Protein ID
ABCA1	NM_005502.3	NP_005493.2
	XM_005251773.2	XP_005251830.1
	XM_005251776.2	XP_005251833.1
	XM_011518339.2	XP_011516641.1
	XM_011518340.2	XP_011516642.1
	XM_011518341.2	XP_011516643.1
	XM_011518342.2	XP_011516644.1
	XM_011518344.2	XP_011516646.1
	XM_017014378.1	XP_016869867.1
	XM_017014379.1	XP_016869868.1
	XM_017014380.1	XP_016869869.1
	XM_017014381.1	XP_016869870.1
	XM_017014382.1	XP_016869871.1
	AB037924.1	BAB07875.1
	AB055982.1	BAB63210.1
	AB445477.1
	AF165281.1	AAD49849.1
	AF258627.1	AAF69513.1
	AF285167.1	AAF98175.1
	AJ012376.1	CAA10005.1
	AK024328.1
	BC146856.1
	BX955241.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv12831n54	Chr.9:104840397 - 104914659 on Build GRCh38	Loss	ABCA1
esv3891706	Chr.9:104480016 - 105304573 on Build GRCh38	Gain	OR13C9 ABCA1 OR13C3 SLC44A1 OR13C8 OR13F1 OR13C4 LOC105376196 OR13C2 NIPSNAP3A OR13D1 OR13C5 NIPSNAP3B
dgv12832n54	Chr.9:104856400 - 104893567 on Build GRCh38	Loss	ABCA1
nsv509315	Chr.9:104868060 - 104897299 on Build GRCh38	Insertion	ABCA1
esv3891705	Chr.9:104391828 - 106660921 on Build GRCh38	Loss	FSD1L LINC01505 OR13C9 ABCA1 MIR8081 OR13C3 SLC44A1 OR13C8 OR13F1 OR13C4 LOC105376196 TMEM38B OR13C2 NIPSNAP3A TAL2 OR13D1 RALGAPA1P1 FKTN OR13C5 NIPSNAP3B
nsv466471	Chr.9:104849546 - 104914659 on Build GRCh38	Loss	ABCA1