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See other RUNX1 CNV Assays ›
Gene Symbol
RUNX1
Assay Reference Genome
Location

Chr.21:34798239 on build GRCh38
Cytoband
Assay ID Hs05548979_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 861

Gene Name:

 RUNX family transcription factor 1

Gene Aliases:

 AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1, PEBP2aB, PEBP2alpha

Location:

 Chr.21:34787801-35049302 on Build GRCh38

Assay Gene Location:

 Within Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RUNX1 NM_001001890.3 NP_001001890.1
NM_001754.5 NP_001745.2
XM_005261068.4 XP_005261125.1
XM_005261069.5 XP_005261126.1
XM_011529766.3 XP_011528068.1
XM_011529767.3 XP_011528069.1
XM_011529768.3 XP_011528070.1
XM_047441007.1 XP_047296963.1
XM_047441009.1 XP_047296965.1
XM_047441010.1 XP_047296966.1
XM_047441011.1 XP_047296967.1
XM_047441012.1 XP_047296968.1
XM_047441013.1 XP_047296969.1
XM_047441014.1 XP_047296970.1
XM_047441015.1 XP_047296971.1
AK226159.1
AL581043.3
BC136380.1 AAI36381.1
BC136381.1 AAI36382.1
BC144053.1 AAI44054.1
D43968.1 BAA07903.1
D43969.1 BAA07904.1
D89788.1 BAA14020.1
D89789.1 BAA14021.1
D89790.1 BAA14022.1
L34598.1 AAA51720.1
X79549.1 CAA56092.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2025-12-01, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3568160 Chr.21:34797680 - 34798922 on Build GRCh38 Loss RUNX1
nsv5550749 Chr.21:34567808 - 34891808 on Build GRCh38 Duplication LINC00160 RUNX1 RCAN1 LINC01426 RUNX1-AS1 CLIC6
nsv5539790 Chr.21:5227438 - 39583816 on Build GRCh38 Insertion KRTAP19-4 GABPA NCAM2 RNA18SN2 RNA5-8SN3 IGHV1OR21-1 HEMK2 KCNE1 SMIM34 TTC3-AS1 CLDN14 DNAJC28 KRTAP25-1 LINC00317 CH507-42P11.6 EVA1C ANKRD30BP2 MIR3156-3 GRIK1-AS2 MRPL39 MIR10396A LOC102724354 LINC01425 LINC00113 LINC01667 LOC100506403 PAXBP1 RNA28SN1 NRIP1 MIR802 SAMSN1 LINC03104 MIR6130 IL10RB-DT KRTAP19-2 BRWD1 LOC102723475 LOC124905049 KRTAP6-3 BACH1 JAM2 GRIK1-AS3 CBR1-AS1 LINC01689 ERG CHAF1B LINC00649 KRTAP19-3 CBR3-AS1 LINC01683 MIR6508 MRPS6 SYNJ1 LINC01690 KRTAP20-3 KCNJ6-AS1 MIR8069-1 SH3BGR SCAF4 LCA5L ABCC13 LIPI KCNJ6 MIR6724-1 KRTAP26-1 URB1 RNA5-8SN2 LINC02573 LOC101928398 KRTAP20-4 BACH1-IT3 TIAM1 LTN1 CXADR KRTAP19-1 CLDN17 URB1-AS1 USP25 GET1 SETD4-AS1 IFNGR2 ETS2 BRWD1-AS1 RNA45SN1 OLIG1 POTED C21orf140 LOC102723451 MEMO1P1 RCAN1 SNORD74B LINC00945 KCNJ15 TEKT4P2 MIR548XHG MIR3648-1 GET1-SH3BGR KRTAP20-2 NCOR1P4 TMEM50B LINC00314 RWDD2B LOC105372753 C21orf91-OT1 RNA28SN2 APP-DT EPCIP KCNE2 MIR99A RIPPLY3 DSCR8 LOC105372793 KRTAP21-2 HLCS TTC3 ANKRD20A11P LOC107983987 SAMSN1-AS1 DOP1B LINC01426 CYYR1-AS1 LINC01548 RNA18SN3 LOC105372791 HLCS-AS1 LOC101928269 RNA45SN3 RNA5-8SN1 LOC101927345 PPP1R2P2 IFNAR1 KRTAP22-2 LOC102724334 LOC101928126 MAP3K7CL KRTAP23-1 SMIM11 RUNX1 IFNAR2 HUNK KRTAP19-8 DSCR4 KRTAP19-5 CLIC6 LINC00114 LINC00160 LINC00307 CCT8 MIR155HG DSCR10 KRTAP6-2 MORC3 KRTAP21-3 KRTAP20-1 KRTAP6-1 LINC00161 LOC110091777 SLC5A3 ETS2-AS1 LOC102724428 LINC01695 LOC100288590 BACH1-IT2 OLIG2 LOC105379514 BTG3 KRTAP24-1 MIRLET7C LOC124905050 KRTAP22-1 MIR6501 SETD4 PIGP RUNX1-IT1 SIM2 DSCR9 IFNAR2-IL10RB LOC102723360 LINC01674 MRAP-AS1 GRIK1 LINC01673 ATP5PO HMGN1 VPS26C GART CHODL DYRK1A CLDN14-AS1 PSMG1 CYP4F29P MIR3648-2 LINC02943 PAXBP1-AS1 SON SNORA80A HSPA13 MIR4759 ADAMTS1 TIAM1-AS1 ATP5PF LINC03147 LINC00308 BAGE2 LOC106780825 LOC102724594 KRTAP8-1 APP LINC00189 KRTAP11-1 ASMER1 CBR1 MIR125B2 KRTAP15-1 LINC00158 LOC105369308 MRAP MIR6724-3 KRTAP13-4 CRYZL1 RBM11 LOC101930100 RPL23P2 LOC110091776 LOC101927745 DONSON CFAP298 ADAMTS5 SOD1 LOC107987288 LINC01687 RUNX1-AS1 CLDN8 LINC01549 MIR10396B KRTAP13-3 GRIK1-AS1 LINC03105 LINC00159 LINC00310 KRTAP19-7 LOC102724560 C21orf91 LOC105377134 LINC00320 LINC01684 TCP10L LINC00515 LINC01423 LOC105379499 LOC101928107 BRWD1-AS2 IL10RB KRTAP13-2 LOC105379504 KRTAP19-6 D21S2088E ITSN1 CYYR1 LOC105369306 MIS18A LINC01692 CBR3 MIR155 LINC01436 USP16 MIR8069 EPCIP-AS1 LOC102724652 MIR6724-2 LOC102724843 LOC105372762 LINC01700 LOC102723553 SOD1-DT TPTE MIR99AHG MIR6724-4 RNA45SN2 KRTAP21-1 CFAP298-TCP10L KRTAP13-1 MIR4327 TMPRSS15 RNA28SN3 KRTAP27-1 LINC02920 BTG3-AS1 RNA18SN1 MIS18A-AS1 LINC01697 MIR3118-1 KRTAP7-1 LINC01666 MIR548X

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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