LC-MS Data Processing Software

Transforming your high-quality data into confident knowledge

Our LC-MS data processing software ensures that data analysis is not a limiting factor in your laboratory. We offer application-specific packages, covering fields from -omics and pharmaceuticals to routine quantitative applications, to meet your challenges and deliver the insights that allow you to make informed decisions and drive your discoveries forward. Transform your data into actionable knowledge with reliability and confidence, even for the most challenging analyses.

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Data processing software comparison
Software Pharma/ biopharma analysis Academic research & multi-omics Food & beverage testing Clinical research Forensic toxicology Environmental & industrial testing
Chromeleon CDS            
Compound Discoverer            
Mass Frontier            
BioPharma Finder            
Proteome Discoverer            
TraceFinder            
LipidSearch            
ProSightPC            
SimGlycan            

Learn more about data processing software by application area

Discover what our application-specific LC-MS software offerings can do for your analyses.

Pharmaceuticals

Whether you are working on a small-molecule pharmaceutical or the next blockbuster biotherapeutic, each stage of the development pipeline is unique. From discovery, development, and clinical studies, to manufacturing and quality control, our innovative LC-MS software can bring your life-changing therapeutics to market faster. Discover our latest packages for pharma and biopharma, including support for multi-attribute method (MAM) workflows and compliance-ready intact mass analysis.

BioPharma Finder Software

BioPharma Finder software offers intact mass, top-down, peptide mapping, and multi-attribute methods (MAM) for rapid and confident protein analyses. Save time and identify more with relative quantitative capabilities and visualization tools that provide insights into your data. This software also offers seamless transfer of your data into the compliance-ready Chromeleon Chromatography Data System (CDS) for MAM peptide mapping and intact mass analysis.

Compound Discoverer Software

From extractables and leachables and metabolite identification to pathways and impurities analyses, Compound Discoverer software allows you to confidently identify unknowns using the mzCloud mass spectral library and quickly find and identify important statistical differences between sample sets.

Mass Frontier Software

Mass Frontier Spectral Interpretation software complements the capabilities of our Compound Discoverer software to confidently transform in-depth MSn data into structures. It works with metabolic pathways analysis and the curation of your own spectral libraries, too.

Chromeleon Chromatography Data System

When compliance is required, Chromeleon Chromatography Data System (CDS) interfaces with BioPharma Finder software to allow you to confidently run Multiple Attribute Method (MAM) experiments, or to control instruments from different vendors in an enterprise environment.

TraceFinder Software

From confident screening, confirmation and quantitation of unknowns to the identification of known unknowns, TraceFinder software maximizes laboratory productivity, no matter your level of experience, by combining instrument control, templated methods and reporting.

Proteome Discoverer Software

With increasing focus on host cell protein (HCP) analysis, take the highest quality HRAM MS data and identify your impurity proteins for subsequent monitoring throughout the manufacturing and quality control process.

SimGlycan Software

SimGlycan software helps you make the most out of your high-quality, comprehensive MSn data to determine glycan heterogeneity and isomeric forms with automated matching of mass spectral databases.

Scientists looking at -omics data

Omics analysis — covering proteomics, metabolomics, lipidomics, and glycomics — requires instrumentation that can appropriately characterize omics samples with sufficient depth and quality. Learn how the appropriate market-specific data analysis tools can improve accuracy, increase productivity, and unlock the true value of your data.

An academic researcher at a computer
Academic research

Learn how our LC-MS software solutions are tailor-made to deliver real value applications from multi-omics (proteomics, metabolomics, lipidomics and glycomics), environmental, food and beverage, clinical and forensics, and pharma/biopharma to general analytical services.

BioPharma Finder Software

Our BioPharma Finder software offers workflow driven analysis of intact mass, top-down, peptide mapping and multi-attribute methods (MAM) for rapid and confident protein analyses. Save time and identify more with its relative qualitative capabilities and visualization tools that provide insights into your data.

Compound Discoverer Software

From extractables and leachables and metabolite identification to pathways and impurities analyses, Compound Discoverer software allows you to confidently identify unknowns and quickly find and identify important statistical differences between sample sets.

Mass Frontier Software

Confidently transform in-depth MSn data into structures with comprehensive structural identification using extensive, high-quality fragmentation libraries. Curate your own high-quality spectral libraries to increase your knowledge of detected compounds.

Chromeleon Chromatography Data System

Offering full compliance tools, as well as open-access capabilities for multiple instruments including HRAM-MS and multi-vendor support, Chromeleon Chromatography Data System (CDS) includes extensive quantitative capabilities in an enterprise-ready environment.

TraceFinder Software

From confident screening, confirmation and quantitation of unknowns to the identification of known unknowns, TraceFinder software maximizes productivity, no matter your level of experience, by combining instrument control, templated methods and reporting.

Proteome Discoverer Software

With a full suite of analysis tools, the flexibility to address multiple research workflows, and an easy-to-use, wizard-driven interface, Proteome Discoverer software provides a comprehensive platform for your research.

ProSightPC Software

ProSightPC software provides rapid identification and characterization of both intact proteins and peptides with support for middle-down and bottom-up experiments. This software is recommended for top-down protein MS/MS identification, elucidation of unknown PTMs and protein database curation.

SimGlycan Software

SimGlycan software helps you make the most out of your high-quality, comprehensive MSn data to determine glycan heterogeneity and isomeric forms with automated matching of mass spectral databases.

LipidSearch Software

Using extensive lipid database information and precursor ion, product ion and neutral loss information from LC-MS and MSn experiments, LipidSearch software uses automated identification and relative quantitation to reduce the guesswork in lipid identification.

Food and beverages

From food and beverage analytical testing to authenticity analysis, having the correct tools to deliver accurate, reliable answers is critical. Our software tools speed targeted analyses and investigate unknowns, so analysts can maintain their focus on ensuring consumer safety.

TraceFinder Software

Revolutionize your pesticide and veterinary drug analyses using TraceFinder software as part of the fully validated Pesticide Explorer and VetDrugs Explorer end-to-end workflows.

Chromeleon Chromatography Data System

Use the Chromeleon Chromatography Data System (CDS) when your quantitative food and beverage testing workflows require compliance, or there is the need to control multiple instruments from different vendors in an enterprise environment.

Compound Discoverer Software

Automate the screening and identification of unexpected/unwanted compounds, including contact materials, additives, pesticides, veterinary drugs, and more, as well as find statistically relevant differences between sample sets with our Compound Discoverer software.

Mass Frontier Software

Mass Frontier software complements Compound Discoverer software, providing in-depth structural characterization from your MSn data and facilitating curation of your libraries to expand your identification and screening capabilities.

A vial of blood and a chromatogram

Mass spectrometry drives the development of new screening and clinically relevant tests and also supports the development of targeted therapeutics. Bridging the gap from discovery to verification and validation requires high-performing instruments and tailored software, as well as sophisticated skills in MS-based biomarker discovery and method development for biomarker verification.

TraceFinder Software

For routine high-throughput clinical analyses, TraceFinder software can maximize laboratory productivity, no matter your level of experience, through instrument control (including multiplexed systems), templated methods, and reporting. It also ensures that you can reliably access accurate results.

Chromeleon Chromatography Data System

When you need compliance, Chromeleon Chromatography Data System (CDS) offers compliance-ready control of multiple vendors’ instrumentation, as well as Thermo Scientific triple-quadrupole and high-resolution mass spectrometers.

Compound Discoverer Software

Discover and identify relevant biomarkers using the comprehensive mzCloud library. Even when there are compounds that may not be present in the library, the powerful mzLogic algorithm can help identify or obtain sub-structural confirmation of these compounds.

Mass Frontier Software

For the most challenging biomarker identification challenges, Mass Frontier Spectral Interpretation software complements the capabilities of our Compound Discoverer software to confidently transform in-depth MSn data into structures.

Scientist handling a vial of blood

The forensic landscape is constantly changing and the need to confidently identify unknowns rapidly has never been greater, especially with the rise of compounds such as designer drugs. Innovation in LC-MS software, allows you to stay ahead of the game in areas from screening and confirmation of known compounds and identification of unknowns to forensic research and anti-doping.

TraceFinder Software

Streamline your forensic experiments with routine targeted screening and quantitation, as well as qualitative review of data from a broad range of instrumentation.

Chromeleon Chromatography Data System

Chromeleon Chromatography Data System (CDS) offers compliance-ready control of multiple vendors’ instrumentation, as well as Thermo Scientific triple-quadrupole and high-resolution mass spectrometers for your routine quantitative targeted screening requirements.

Compound Discoverer Software

The mzCloud library, available through our Compound Discoverer software, simplifies the identification of ever-changing designer drugs. Additionally, the powerful mzLogic algorithm can help automate screening and identification of unexpected/unwanted compounds and even obtain sub-structural confirmation when there are no compound matches within the library.

Mass Frontier Software

Mass Frontier software builds upon the capabilities of Compound Discoverer software to provide confident structural elucidation and exhaustive profiles of complete unknowns using MSn data. It also allows you to curate your own libraries of novel designer drugs for use in subsequent compound identification.

Water and grasses

We provide a range of LC-MS software solutions that provide reliable, accurate and precise results ensuring that analysts can confidently monitor and identify compounds that pose a threat to the environment using qualitative and quantitative assays, while meeting the requirements of today and tomorrow with ease and efficiency.

TraceFinder Software

For environmental analyses, TraceFinder software can maximize laboratory productivity, no matter your level of experience, through instrument control, templated methods, and reporting. From wastewater and drinking water analysis to other complex analyses, meet your regulatory challenges with rapid access to accurate and precise, high-throughput, quantitative results, regardless of the complexity of your matrix.

Chromeleon Chromatography Data System

The Chromeleon Chromatography Data System (CDS) offers compliance-ready control of instrumentation from multiple vendors, as well as Thermo Scientific triple-quadrupole and high-resolution mass spectrometers. Powerful eWorkflows allow users to adopt and run complete methods, including reporting, meeting regulatory guidelines and maintaining data integrity.

Compound Discoverer Software

Compound Discoverer software confidently identifies unknowns and important statistical differences between sample sets. It uses the comprehensive  mzCloud library, in combination with extensive online libraries, to automate the screening and identification of unexpected environmental threats.

Mass Frontier Software

Mass Frontier Spectral Interpretation software complements the capabilities of our Compound Discoverer software to confidently transform in-depth MSn data into structures with comprehensive structural identification using extensive, high-quality fragmentation libraries. It also allows you to curate your own high-quality spectral libraries to increase your knowledge of detected compounds and use the latest structural detection algorithms for confident detection of new and emerging contaminants.



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