What are the Granzyme A and Granzyme B apoptosis pathways?

The Granzyme A and Granzyme B apoptosis pathways are mechanisms by which cell apoptosis is induced. Granzyme A, a tryptase, and Granzyme B, a serine protease, independently activate apoptosis when delivered into the target cells with perforin (PFN), a pore-forming protein. Granzyme A activates a caspase-independent death that is morphologically identical to apoptosis, characterized by single-stranded DNA damage, mitochondrial dysfunction, and loss of cell membrane integrity, whereas Granzyme B activates apoptosis by cleaving caspases and some key caspase pathway substrates (1).

Common mechanism of granzyme entry into target cells

Killer lymphocytes are key players in the effector arm of the immune response that eliminate cells infected with intracellular pathogens and transformed tumor cells. Killer cells in both adaptive and innate immunity—T cells (CTLS) and natural killer (NK) cells, respectively—use the same basic mechanisms for destroying their targets, although they are triggered by distinct receptors and the expression of cytotoxic granules is constitutive in NK cells, but regulated in T cells (2).

Release of the contents of cytotoxic granules into the immunological synapse formed between the killer cell and its target cell is important for immune elimination of viruses, intracellular bacteria, and tumors (3). Granzyme A, a tryptase, and Granzyme B, a serine protease, are the most abundant granules. 

Although Granzyme A and Granzyme B apoptosis pathways follow distinct paths to trigger cellular death, they share a common mechanism to get into the target cell. The cytotoxic granules of CTLs and NK cells are specialized secretory lysosomes that contain perforin and granzymes (2). When CTLs and NK cells encounter their target cells, these granules are exocytosed as the beginning step and set up the process. Upon exocytosis of granule contents toward the immune synapse, perforin forms small pores in the target cell membrane, allowing the passage of Ca2+ but not larger molecules such as granzymes. The Ca2+ influx triggers the damaged membrane response, resulting in endocytic uptake of CTL/NK cell membranes and associated granule contents. The newly formed early endosomes fuse to form large vesicles, termed gigantosomes, containing perforin and Granzymes. Gigantosomes fail to acidify and perforin-mediated formation of large pores in the gigantosome membrane allow release of granzyme into the cytosol (4). Once released into the cytoplasm, Granzyme A and Granzyme B follow their respective paths.

Granzyme A pathway

Granzyme A activates a caspase-independent cell death pathway with morphological features of apoptosis but has unique substrates and mediators (3). After entering the cytosol of target cells, Granzyme A is specifically imported into mitochondria through the Tim/Tom/Pam import pathway. Once inside, Granzyme A disrupts inner membrane-associated ETC complex I by cutting NADH dehydrogenase (ubiquinone) Fe-S protein 3 (NDUFS3), which is located in the neck of the stalk of complex I that protrudes into the matrix. Disrupting complex I leads to ROS production and interferes with electron transport, the maintenance of the mitochondrial trans-membrane potential, and ATP generation. The superoxide generated by damaged mitochondria triggers nuclear translocation of the endoplasmic reticulum–associated SET complex. The SET complex contains three nucleases [the base excision repair (BER) endonuclease Ape1, an endonuclease NM23-H1, and a 5'-3' exonuclease Trex1], the chromatin-modifying proteins SET and pp32, which are also inhibitors of PP2A, and a DNA-binding protein called HMGB2 that recognizes distorted DNA. At this time Granzyme A also rapidly translocates from the cytosol and concentrates in the nucleus, where key substrates are cleaved. Granzyme A cleaves 3 components of the SET complex: SET, HMGB2, and APE1. SET is an inhibitor of the SET complex endonuclease NM23-H1. SET cleavage activates NM23-H1 to make single-stranded DNA nicks. These are extended by the SET complex exonuclease TREX1. Granzyme A also degrades the linker histone H1 and removes the tails from the core histones, which opens up chromatin and makes it accessible to these nucleases (3, 5-6). 

Granzyme B pathway

Once in the cytoplasm, Granzyme B targets multiple protein substrates, resulting eventually into apoptotic demise of the target cell both in caspase-dependent and independent manners. To date, more than three hundred intracellular and extracellular proteins have been identified as potential Granzyme B substrates. One of the major substrates of Granzyme B is pro-caspase-3. Granzyme B activated caspase-3 results in the processing of several cellular substrates integral to eliciting the apoptotic phenotype. Moreover, the apoptotic pro-caspases including procaspase-6, 7, 8, 10, 9, and 2 also serve as substrates for the active Granzyme B. However, it is emphasized that Granzyme B can only proteolytically cleave these initiator pro-caspases; it cannot activate them. The initiator pro-caspases are activated exclusively by homodimerization in specific multi-protein activation platforms such as apoptosome, DISC, and PIDDosome (7). The mitochondrial pathway by which Granzyme B induces cell death is through the cleavage of the BH3-only protein Bid into a truncated form, tBid, which then translocates to the mitochondrion and disrupts mitochondrial membrane integrity through interactions with the pro-apoptotic proteins BAX and/or BAK. In this instance, the pro-apoptotic proteins BAX or BAK mediate mitochondrial outer membrane permeabilization (MOMP) and release several pro-apoptotic intermembrane mitochondrial proteins such as cyt-c, second mitochondria-derived activator of caspases (Smac), high temperature requirement A2 (HtrA2)/Omi serine protease, apoptosis-inducing factor (AIF) and endonuclease-G (Endo-G) (2, 7-8). Cytochrome c release stimulates the formation of a macromolecular complex consisting of cytochrome c, dATP, apaf-1, and pro-caspase-9 known as the apoptosome, which results in the activation of caspase-9 and the subsequent activation of caspases-3,6,7, culminating in proteolysis of multiple proteins. Granzyme B also cleaves the anti-apoptotic protein Mcl-1, which results in the release of the pro-apoptotic Bcl-2 family member Bim, followed by mitochondrial outer membrane permeabilization and cytochrome c release (8). ENDOG, released by the action of Granzyme B-cleaved BID, can induce oligonucleosomal DNA damage (2). In addition to BID-mediated mitochondrial damage, Granzyme B also directly disrupts the mitochondrial transmembrane potential in a caspase- and BID-independent manner (2). Within the nucleus, Granzyme B directly cleaves the subunit A of DNA fragmentation factor (DFF), which is a heterodimer, consisting of the inhibitor/chaperone subunit A (DFFA/ICAD) and the nuclease subunit B (DFFB/CAD), and is pre-bound to DNA. After cleavage, DFFB homodimerizes and cleaves both strands of the genomic DNA. The Granzyme B-mediated DFF activation can be an alternative way leading to apoptotic DNA fragmentation in cancer cells which are unable to translocate the active caspase-3, a main DFF activator, into the nucleus or carry a loss-of-function mutation of the CASP3 gene (7).

Granzyme pathway summary

Though Granzyme A activates caspase-independent programmed cell death that morphologically resembles apoptosis but has unique substrates and mediators, and Granzyme B activates caspase cell death pathways by initiating effector caspase cleavage and by directly cleaving some key caspase pathway substrates, such as bid and DFFA, few substrates that maintain the nuclear envelope (such as PARP-1, which recruits DNA repair factors and lamin B) are common to both Granzyme A and Granzyme B (3). We conclude that both the granzymes act in different ways but independently activate programmed cell death in the process of clearing intracellular pathogens and tumors.

Granzyme A and Granzyme B pathway

Granzyme Pathway schematic
Cartoon schematic showing what symbols used in the pathway schematic represent.
Granzyme Pathway schematic
Cartoon schematic showing what symbols used in the pathway schematic represent.
  1. Zhu P, Martinvalet D, Chowdhury D, et al. (2009) The cytotoxic T lymphocyte protease granzyme A cleaves and inactivates poly(adenosine 5'-diphosphate-ribose) polymerase-1. Blood 114(6):1205-16.
  2. Lieberman J (2003) The ABCs of granule-mediated cytotoxicity: new weapons in the arsenal. Nat Rev Immunol 3(5):361-70.
  3. Lieberman J (2010) Granzyme A activates another way to die. Immunol Rev 235(1):93-104.
  4. Gordy C, He YW (2012) Endocytosis by target cells: an essential means for perforin- and granzyme-mediated killing. Cell Mol Immunol 9(1):5-6.
  5. Lucken-Ardjomande S, Martinou JC (2008) Granzyme a, a stealth killer in the mitochondrion. Cell 133(4):568-70.
  6. Chowdhury D, Beresford PJ, Zhu P, et al. (2006) The exonuclease TREX1 is in the SET complex and acts in concert with NM23-H1 to degrade DNA during granzyme A-mediated cell death. Mol Cell 23(1):133-42.
  7. Rousalova I, Krepela E (2010) Granzyme B-induced apoptosis in cancer cells and its regulation (review). Int J Oncol 37(6):1361-78.
  8. Boivin WA, Cooper DM, Hiebert PR, et al. (2009) Intracellular versus extracellular granzyme B in immunity and disease: challenging the dogma. Lab Invest 89(11):1195-220.


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